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Scorpion, Part II

Janeway strikes a deal with the Borg to exchange the modified nanotechnology for a safe trip through Borg territory, but almost immediately things go wrong. The Borg attempt to force Janeway into a direct neural link to the Collective, but she instead demands that the Borg choose a single drone to facilitate verbal communication, and a female human Borg called Seven of Nine is appointed. An ambush by Species 8472 destroys the Borg cube containing Janeway, but she, Tuvok and a number of Borg safely transport back to Voyager. The Borg quickly assimilate the cargo bay which they have taken over, and Janeway must recover from injuries she sustained in the attack on the Borg ship. When Seven of Nine demands a change in the ship's course taking it into the heart of Borg space, Chakotay decides to abort the newly-forged alliance with the Borg. Now the crew faces the prospect of a Borg invasion from within, or a violent death at the hands of Species 8472, unless Janeway and Chakotay can overcome their differences of opinion regarding cooperation with the Borg.

Voyager, seizoen 4